Browse-BactMentha

Display specific BactMentha datasets

BactMentha dataset filtered on host taxa:

Click on a taxon button to display the BactMentha database pathogen-host protein-protein interactions for the corresponding host taxon.
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All Data

Human

Mouse

Rat

BactMentha dataset filtered on pathogen categories:

The World Health Organization (WHO) Priority Pathogens are infectious microorganisms considered a significant threat to global public health, often due to their potential for causing severe outbreaks or limited treatment options. According to the European Union classification system of biological agents, hazard groups (from 1 to 4) categorize, based on their risk, those which may affect the human health (https://www.hse.gov.uk/pubns/misc208.pdf). Click on the following buttons to filter the BactMentha Datasets and display only the interactions involving pathogens in either WHO priority list or in an Hazard group. (Filter on Hazard groups 1 and 4 have not been added as no such pathogens are found in BactMentha).

Who priority
or
Hazard groups

Who priority

Hazard group 2

Hazard group 3

BactMentha dataset filtered on Human-Bacteria annotated protein interactions:

Experimental data have been recovered on some protein-protein interactions, which permit to get more details on the binding regions on either host protein side, pathogen protein side or both. The Ontology Search (OS) definition of those binding regions can be found here. Moreover, mimicINT tool have been used to infer some interaction interfaces between Human proteins and bacterial proteins based on known domain-domain or domain-motif templates of interaction. Click on the following buttons to display only the Human-Bacteria protein-protein interactions for which there are known experimental binding regions (BR) on at least one protein side or mimicINT predicted interfaces (MI) of interaction (always both sides).

Binding regions

mimicINT interfaces

Bacterial pathogens concerned as who priority or in hazard groups

Taxon ID	Taxon Name	Taxon Family	WHO priority	Hazard Group
562	Escherichia coli	Enterobacteriaceae	critical	2
83334	Escherichia coli O157:H7	Enterobacteriaceae	critical	3
574521	Escherichia coli O127:H6 (strain E2348/69 / EPEC)	Enterobacteriaceae	critical	2
83332	Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)	Mycobacteriaceae	critical	3
83333	Escherichia coli (strain K12)	Enterobacteriaceae	critical	NULL
90370	Salmonella typhi	Enterobacteriaceae	high	3
90371	Salmonella typhimurium	Enterobacteriaceae	high	2
99287	Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)	Enterobacteriaceae	high	2
208964	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	Pseudomonadaceae	high	2
216597	Salmonella typhimurium (strain SL1344)	Enterobacteriaceae	high	2
588858	Salmonella typhimurium (strain 14028s / SGSC 2262)	Enterobacteriaceae	high	2
287	Pseudomonas aeruginosa	Pseudomonadaceae	high	2
485	Neisseria gonorrhoeae	Neisseriaceae	high	2
622	Shigella dysenteriae	Enterobacteriaceae	high	2
623	Shigella flexneri	Enterobacteriaceae	high	2
632	Yersinia pestis	Yersiniaceae	high	3
727	Haemophilus influenzae	Pasteurellaceae	medium	2
1280	Staphylococcus aureus	Staphylococcaceae	high	2
1314	Streptococcus pyogenes	Streptococcaceae	medium	2
67825	Citrobacter rodentium	Enterobacteriaceae	critical	NULL
93061	Staphylococcus aureus (strain NCTC 8325 / PS 47)	Staphylococcaceae	high	2
149539	Salmonella enteritidis	Enterobacteriaceae	high	2
155864	Escherichia coli O157:H7 str. EDL933	Enterobacteriaceae	critical	3
158878	Staphylococcus aureus (strain Mu50 / ATCC 700699)	Staphylococcaceae	high	2
158879	Staphylococcus aureus (strain N315)	Staphylococcaceae	high	2
301447	Streptococcus pyogenes serotype M1	Streptococcaceae	medium	2
301452	Streptococcus pyogenes serotype M49	Streptococcaceae	medium	2
319701	Streptococcus pyogenes serotype M28 (strain MGAS6180)	Streptococcaceae	medium	2
375177	Haemophilus influenzae (strain NTHi 3655)	Pasteurellaceae	medium	2
585396	Escherichia coli O111:H- (strain 11128 / EHEC)	Enterobacteriaceae	critical	3
637910	Citrobacter rodentium (strain ICC168)	Enterobacteriaceae	critical	NULL
652616	Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)	Mycobacteriaceae	critical	3
701177	Escherichia coli O55:H7 (strain CB9615 / EPEC)	Enterobacteriaceae	critical	2
862964	Haemophilus influenzae (strain 10810)	Pasteurellaceae	medium	2

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