Browse-BactMentha

Display specific BactMentha datasets

BactMentha dataset filtered on host taxa:

Click on a taxon button to display the BactMentha database pathogen-host protein-protein interactions for the corresponding host taxon.
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All Data

Human

Mouse

Rat

BactMentha dataset filtered on pathogen categories:

The World Health Organization (WHO) Priority Pathogens are infectious microorganisms considered a significant threat to global public health, often due to their potential for causing severe outbreaks or limited treatment options. According to the European Union classification system of biological agents, hazard groups (from 1 to 4) categorize, based on their risk, those which may affect the human health (https://www.hse.gov.uk/pubns/misc208.pdf). Click on the following buttons to filter the BactMentha Datasets and display only the interactions involving pathogens in either WHO priority list or in an Hazard group. (Filter on Hazard groups 1 and 4 have not been added as no such pathogens are found in BactMentha).

Who priority
or
Hazard groups

Who priority

Hazard group 2

Hazard group 3

BactMentha dataset filtered on Human-Bacteria annotated protein interactions:

Experimental data have been recovered on some protein-protein interactions, which permit to get more details on the binding regions on either host protein side, pathogen protein side or both. The Ontology Search (OS) definition of those binding regions can be found here. Moreover, mimicINT tool have been used to infer some interaction interfaces between Human proteins and bacterial proteins based on known domain-domain or domain-motif templates of interaction. Click on the following buttons to display only the Human-Bacteria protein-protein interactions for which there are known experimental binding regions (BR) on at least one protein side or mimicINT predicted interfaces (MI) of interaction (always both sides).

Binding regions

mimicINT interfaces

Bacterial pathogens in hazard group 2

Taxon ID	Taxon Name	Taxon Family	Hazard Group	WHO priority	Interactions
727	Haemophilus influenzae	Pasteurellaceae	2	medium	12
272843	Pasteurella multocida (strain Pm70)	Pasteurellaceae	2	NULL	4
672	Vibrio vulnificus	Vibrionaceae	2	NULL	1
446	Legionella pneumophila	Legionellaceae	2	NULL	14
1236608	Moraxella catarrhalis (strain BBH18)	Moraxellaceae	2	NULL	0
487	Neisseria meningitidis	Neisseriaceae	2	NULL	2
210	Helicobacter pylori	Helicobacteraceae	2	NULL	10
297245	Legionella pneumophila (strain Lens)	Legionellaceae	2	NULL	2
1502	Clostridium perfringens	Clostridiaceae	2	NULL	3
99287	Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)	Enterobacteriaceae	2	high	63
441771	Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)	Clostridiaceae	2	NULL	6
471472	Chlamydia trachomatis serovar L2 (strain ATCC VR-902B / DSM 19102 / 434/Bu)	Chlamydiaceae	2	NULL	4
158878	Staphylococcus aureus (strain Mu50 / ATCC 700699)	Staphylococcaceae	2	high	4
297246	Legionella pneumophila (strain Paris)	Legionellaceae	2	NULL	1
1280	Staphylococcus aureus	Staphylococcaceae	2	high	34
622	Shigella dysenteriae	Enterobacteriaceae	2	high	1
1314	Streptococcus pyogenes	Streptococcaceae	2	medium	14
498213	Clostridium botulinum (strain Okra / Type B1)	Clostridiaceae	2	NULL	1
1334565	Listeria monocytogenes serotype 1/2a (strain EGD / Mackaness)	Listeriaceae	2	NULL	7
148942	Streptococcus equi subsp. equi	Streptococcaceae	2	NULL	5
257313	Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)	Alcaligenaceae	2	NULL	6
1320	Streptococcus sp. group G	Streptococcaceae	2	NULL	2
588858	Salmonella typhimurium (strain 14028s / SGSC 2262)	Enterobacteriaceae	2	high	683
238	Elizabethkingia meningoseptica	Weeksellaceae	2	NULL	1
596329	Peptostreptococcus anaerobius 653-L	Peptostreptococcaceae	2	NULL	0
257310	Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)	Alcaligenaceae	2	NULL	1
242619	Porphyromonas gingivalis (strain ATCC BAA-308 / W83)	Porphyromonadaceae	2	NULL	1
85962	Helicobacter pylori (strain ATCC 700392 / 26695)	Helicobacteraceae	2	NULL	6
149539	Salmonella enteritidis	Enterobacteriaceae	2	high	1
636	Edwardsiella tarda	Hafniaceae	2	NULL	1
272561	Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)	Chlamydiaceae	2	NULL	338
273123	Yersinia pseudotuberculosis serotype I (strain IP32953)	Yersiniaceae	2	NULL	2
623	Shigella flexneri	Enterobacteriaceae	2	high	66
1496	Clostridioides difficile	Peptostreptococcaceae	2	NULL	16
272624	Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)	Legionellaceae	2	NULL	93
243277	Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)	Vibrionaceae	2	NULL	4
574521	Escherichia coli O127:H6 (strain E2348/69 / EPEC)	Enterobacteriaceae	2	critical	79
491	Neisseria meningitidis serogroup B	Neisseriaceae	2	NULL	3
1309	Streptococcus mutans	Streptococcaceae	2	NULL	1
480	Moraxella catarrhalis	Moraxellaceae	2	NULL	17
315277	Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13)	Chlamydiaceae	2	NULL	1
93061	Staphylococcus aureus (strain NCTC 8325 / PS 47)	Staphylococcaceae	2	high	16
375177	Haemophilus influenzae (strain NTHi 3655)	Pasteurellaceae	2	medium	1
1334	Streptococcus dysgalactiae	Streptococcaceae	2	NULL	4
227941	Chlamydia caviae (strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC)	Chlamydiaceae	2	NULL	3
319701	Streptococcus pyogenes serotype M28 (strain MGAS6180)	Streptococcaceae	2	medium	2
563041	Helicobacter pylori (strain G27)	Helicobacteraceae	2	NULL	11
212042	Anaplasma phagocytophilum (strain HZ)	Anaplasmataceae	2	NULL	12
243243	Mycobacterium avium (strain 104)	Mycobacteriaceae	2	NULL	3
393305	Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)	Yersiniaceae	2	NULL	8
1491	Clostridium botulinum	Clostridiaceae	2	NULL	34
216597	Salmonella typhimurium (strain SL1344)	Enterobacteriaceae	2	high	808
212717	Clostridium tetani (strain Massachusetts / E88)	Clostridiaceae	2	NULL	1
272634	Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)	Mycoplasmoidaceae	2	NULL	54
301452	Streptococcus pyogenes serotype M49	Streptococcaceae	2	medium	2
630	Yersinia enterocolitica	Yersiniaceae	2	NULL	25
102618	Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093	Helicobacteraceae	2	NULL	9
90371	Salmonella typhimurium	Enterobacteriaceae	2	high	13
301447	Streptococcus pyogenes serotype M1	Streptococcaceae	2	medium	14
122586	Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)	Neisseriaceae	2	NULL	10
747	Pasteurella multocida	Pasteurellaceae	2	NULL	4
169963	Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)	Listeriaceae	2	NULL	6
562	Escherichia coli	Enterobacteriaceae	2	critical	26
441772	Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)	Clostridiaceae	2	NULL	1
158879	Staphylococcus aureus (strain N315)	Staphylococcaceae	2	high	3
862964	Haemophilus influenzae (strain 10810)	Pasteurellaceae	2	medium	0
701177	Escherichia coli O55:H7 (strain CB9615 / EPEC)	Enterobacteriaceae	2	critical	0
205920	Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas)	Anaplasmataceae	2	NULL	14
485	Neisseria gonorrhoeae	Neisseriaceae	2	high	9
208964	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	Pseudomonadaceae	2	high	1
233412	Haemophilus ducreyi (strain 35000HP / ATCC 700724)	Pasteurellaceae	2	NULL	16
287	Pseudomonas aeruginosa	Pseudomonadaceae	2	high	2

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